Effects of early cold stress on gene expression in Chlamydomonas reinhardtii.
Identifieur interne : 000046 ( Main/Exploration ); précédent : 000045; suivant : 000047Effects of early cold stress on gene expression in Chlamydomonas reinhardtii.
Auteurs : Lun Li [République populaire de Chine] ; Hai Peng [République populaire de Chine] ; Shenglong Tan [République populaire de Chine] ; Junfei Zhou [République populaire de Chine] ; Zhiwei Fang [République populaire de Chine] ; Zhangfeng Hu [République populaire de Chine] ; Lifen Gao [République populaire de Chine] ; Tiantian Li [République populaire de Chine] ; Weixiong Zhang [États-Unis] ; Lihong Chen [République populaire de Chine]Source :
- Genomics [ 1089-8646 ] ; 2020.
Abstract
Cold stress imposes a great impact on the growth of nearly all photosynthetic organisms, including Chlamydomonas reinhardtii (C. reinhardtii). Despite prior studies on the mechanism of stress acclimation in plants, little has been done on the early events of cold sensing in C. reinhardtii. Here, we used C. reinhardtii as a model to study early events of cold signal transduction. By analyzing transcriptomic changes of C. reinhardtii exposed to cold, we found that 3471 genes were differentially expressed after 1 h of cold exposure. These genes were associated with a wide range of biological events and processes such as protein synthesis, cell cycle and protein kinase-based phosphorylation. Besides, the promoter of one gene (named as crAP2) which belongs to AP2/EREBP family and was significantly induced by cold was cloned, and functional analysis was conducted using GUS activity analysis through Agrobacterium-mediated transient assay in tobacco leaves.
DOI: 10.1016/j.ygeno.2019.06.027
PubMed: 31251979
Affiliations:
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Electronic address: weixiong.zhang@wustl.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China; Department of Computer Science and Engineering, Washington University, St. Louis, MO 36130</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Chen, Lihong" sort="Chen, Lihong" uniqKey="Chen L" first="Lihong" last="Chen">Lihong Chen</name><affiliation wicri:level="1"><nlm:affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China. Electronic address: chenlihong@jhun.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Institute for Systems Biology, Jianghan University, Wuhan 430056</wicri:regionArea><placeName><settlement type="city">Wuhan</settlement><region type="région">Hubei</region></placeName></affiliation></author></analytic><series><title level="j">Genomics</title><idno type="eISSN">1089-8646</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Cold stress imposes a great impact on the growth of nearly all photosynthetic organisms, including Chlamydomonas reinhardtii (C. reinhardtii). Despite prior studies on the mechanism of stress acclimation in plants, little has been done on the early events of cold sensing in C. reinhardtii. Here, we used C. reinhardtii as a model to study early events of cold signal transduction. By analyzing transcriptomic changes of C. reinhardtii exposed to cold, we found that 3471 genes were differentially expressed after 1 h of cold exposure. These genes were associated with a wide range of biological events and processes such as protein synthesis, cell cycle and protein kinase-based phosphorylation. Besides, the promoter of one gene (named as crAP2) which belongs to AP2/EREBP family and was significantly induced by cold was cloned, and functional analysis was conducted using GUS activity analysis through Agrobacterium-mediated transient assay in tobacco leaves.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">31251979</PMID><DateRevised><Year>2020</Year><Month>04</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1089-8646</ISSN><JournalIssue CitedMedium="Internet"><Volume>112</Volume><Issue>2</Issue><PubDate><Year>2020</Year><Month>03</Month></PubDate></JournalIssue><Title>Genomics</Title><ISOAbbreviation>Genomics</ISOAbbreviation></Journal><ArticleTitle>Effects of early cold stress on gene expression in Chlamydomonas reinhardtii.</ArticleTitle><Pagination><MedlinePgn>1128-1138</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0888-7543(19)30036-9</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ygeno.2019.06.027</ELocationID><Abstract><AbstractText>Cold stress imposes a great impact on the growth of nearly all photosynthetic organisms, including Chlamydomonas reinhardtii (C. reinhardtii). Despite prior studies on the mechanism of stress acclimation in plants, little has been done on the early events of cold sensing in C. reinhardtii. Here, we used C. reinhardtii as a model to study early events of cold signal transduction. By analyzing transcriptomic changes of C. reinhardtii exposed to cold, we found that 3471 genes were differentially expressed after 1 h of cold exposure. These genes were associated with a wide range of biological events and processes such as protein synthesis, cell cycle and protein kinase-based phosphorylation. Besides, the promoter of one gene (named as crAP2) which belongs to AP2/EREBP family and was significantly induced by cold was cloned, and functional analysis was conducted using GUS activity analysis through Agrobacterium-mediated transient assay in tobacco leaves.</AbstractText><CopyrightInformation>Copyright © 2019. Published by Elsevier Inc.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Lun</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Peng</LastName><ForeName>Hai</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tan</LastName><ForeName>Shenglong</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>School of Information and Communication Engineering, Hubei University of Economics, Wuhan 430205, China. Electronic address: tslnet@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Junfei</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fang</LastName><ForeName>Zhiwei</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Zhangfeng</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Lifen</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Tiantian</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Weixiong</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China; Department of Computer Science and Engineering, Washington University, St. Louis, MO 36130, USA. Electronic address: weixiong.zhang@wustl.edu.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Lihong</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>The Institute for Systems Biology, Jianghan University, Wuhan 430056, China. Electronic address: chenlihong@jhun.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>06</Month><Day>25</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Genomics</MedlineTA><NlmUniqueID>8800135</NlmUniqueID><ISSNLinking>0888-7543</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Chlamydomonas reinhardtii</Keyword><Keyword MajorTopicYN="Y">Cold stress</Keyword><Keyword MajorTopicYN="Y">Early signaling events</Keyword><Keyword MajorTopicYN="Y">Expression pattern</Keyword><Keyword MajorTopicYN="Y">Promoter</Keyword></KeywordList><CoiStatement>Declaration of Competing Interest None declared.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>01</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>06</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>06</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>6</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>6</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>6</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31251979</ArticleId><ArticleId IdType="pii">S0888-7543(19)30036-9</ArticleId><ArticleId IdType="doi">10.1016/j.ygeno.2019.06.027</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li><li>États-Unis</li></country><region><li>Hubei</li><li>Missouri (État)</li></region><settlement><li>Wuhan</li></settlement></list><tree><country name="République populaire de Chine"><region name="Hubei"><name sortKey="Li, Lun" sort="Li, Lun" uniqKey="Li L" first="Lun" last="Li">Lun Li</name></region><name sortKey="Chen, Lihong" sort="Chen, Lihong" uniqKey="Chen L" first="Lihong" last="Chen">Lihong Chen</name><name sortKey="Fang, Zhiwei" sort="Fang, Zhiwei" uniqKey="Fang Z" first="Zhiwei" last="Fang">Zhiwei Fang</name><name sortKey="Gao, Lifen" sort="Gao, Lifen" uniqKey="Gao L" first="Lifen" last="Gao">Lifen Gao</name><name sortKey="Hu, Zhangfeng" sort="Hu, Zhangfeng" uniqKey="Hu Z" first="Zhangfeng" last="Hu">Zhangfeng Hu</name><name sortKey="Li, Tiantian" sort="Li, Tiantian" uniqKey="Li T" first="Tiantian" last="Li">Tiantian Li</name><name sortKey="Peng, Hai" sort="Peng, Hai" uniqKey="Peng H" first="Hai" last="Peng">Hai Peng</name><name sortKey="Tan, Shenglong" sort="Tan, Shenglong" uniqKey="Tan S" first="Shenglong" last="Tan">Shenglong Tan</name><name sortKey="Zhou, Junfei" sort="Zhou, Junfei" uniqKey="Zhou J" first="Junfei" last="Zhou">Junfei Zhou</name></country><country name="États-Unis"><region name="Missouri (État)"><name sortKey="Zhang, Weixiong" sort="Zhang, Weixiong" uniqKey="Zhang W" first="Weixiong" last="Zhang">Weixiong Zhang</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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